LncBase Experimental v.2
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Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-148b-5p


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Go to Predicted module
Filters
Gene
miRNA
Pr. score
DIANA Links
Methods
AC098614.2
hsa-miR-148b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 3
Transcript: ENST00000368528
Biotype: processed_pseudogene
Gene id: ENSG00000213846
Gene Name: AC098614.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
3:27633428-27633456
exon
HITS-CLIP
DIRECT
LncBasev2
AL022237.3
hsa-miR-148b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000446663
Biotype: processed_pseudogene
Gene id: ENSG00000234735
Gene Name: AL022237.3
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
22:43092443-43092471
exon
HITS-CLIP
DIRECT
LncBasev2
22:43092443-43092471
exon
HITS-CLIP
DIRECT
LncBasev2
AL845472.1
hsa-miR-148b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 9
Transcript: ENST00000624675
Biotype: pseudogene
Gene id: ENSG00000279561
Gene Name: AL845472.1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
9:41269998-41270026
exon
HITS-CLIP
DIRECT
LncBasev2
C1orf213
hsa-miR-148b-5p
0.555
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000335648
Biotype: antisense
Gene id: ENSG00000249087
Gene Name: C1orf213
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
1:23370258-23370286
exon
PAR-CLIP
DIRECT
LncBasev2
CASC7
hsa-miR-148b-5p
0.491
mTTBlnPmP
IP

Gene Details
Chromosome: 8
Transcript: ENST00000560295
Biotype: lincRNA
Gene id: ENSG00000259758
Gene Name: CASC7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
8:140521387-140521415
exon
PAR-CLIP
DIRECT
LncBasev2
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
8:140525182-140525210
exon
HITS-CLIP
DIRECT
LncBasev2
8:140525182-140525210
exon
HITS-CLIP
DIRECT
LncBasev2
CTA-292E10.9
hsa-miR-148b-5p
0.755
mTTBlnPmP
IP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Eva Gottwein et al. 2011
Pleura
BC1
IP
Tested Cell Line: BC1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
22:28786150-28786178
exon
PAR-CLIP
DIRECT
LncBasev2
CTB-89H12.4
hsa-miR-148b-5p
0.800
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000499521
Biotype: retained_intron
Gene id: ENSG00000230551
Gene Name: CTB-89H12.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
5:149496135-149496163
exon
HITS-CLIP
DIRECT
LncBasev2
CTC-444N24.11
hsa-miR-148b-5p
0.670
mTTBlnPmP
IP

Gene Details
Chromosome: 19
Transcript: ENST00000593427
Biotype: lincRNA
Gene id: ENSG00000268205
Gene Name: CTC-444N24.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Skalsky Rebecca L. et al. 2012
LCLBAC
IP
Tested Cell Line: LCLBAC
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:57308117-57308145
exon
PAR-CLIP
DIRECT
LncBasev2
19:57308117-57308145
exon
PAR-CLIP
DIRECT
LncBasev2
19:57308117-57308145
exon
PAR-CLIP
DIRECT
LncBasev2
Eva Gottwein et al. 2011
Pleura
BC3
IP
Tested Cell Line: BC3
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
19:57308117-57308145
exon
PAR-CLIP
DIRECT
LncBasev2
CTD-2228K2.1
hsa-miR-148b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 5
Transcript: ENST00000509301
Biotype: processed_pseudogene
Gene id: ENSG00000250645
Gene Name: CTD-2228K2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
5:418729-418757
exon
HITS-CLIP
DIRECT
LncBasev2
FAR1-IT1
hsa-miR-148b-5p
0.397
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000525233
Biotype: sense_intronic
Gene id: ENSG00000254791
Gene Name: FAR1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
11:13669369-13669397
exon
HITS-CLIP
DIRECT
LncBasev2
FLJ12825
hsa-miR-148b-5p
0.651
mTTBlnPmP
IP

Gene Details
Chromosome: 12
Transcript: ENST00000515617
Biotype: lincRNA
Gene id: ENSG00000248265
Gene Name: FLJ12825
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
12:54120078-54120106
exon
HITS-CLIP
DIRECT
LncBasev2
GDI2P1
hsa-miR-148b-5p
-
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: ENST00000429312
Biotype: processed_pseudogene
Gene id: ENSG00000229165
Gene Name: GDI2P1
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
7:48903312-48903340
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
7:48903312-48903340
exon
HITS-CLIP
DIRECT
LncBasev2
GJA9-MYCBP
hsa-miR-148b-5p
0.470
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: NR_037633.1
Biotype: sense
Gene id: NR_037633.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
1:38866940-38866968
exon
HITS-CLIP
DIRECT
LncBasev2
HOXA10-HOXA9
hsa-miR-148b-5p
0.378
mTTBlnPmP
IP

Gene Details
Chromosome: 7
Transcript: NR_037940.1
Biotype: sense
Gene id: NR_037940.1 (gene)
Gene Name: HOXA10-HOXA9
UCSC graphic: -
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
7:27163547-27163575
exon
HITS-CLIP
DIRECT
LncBasev2
7:27162542-27162570
exon
HITS-CLIP
DIRECT
LncBasev2
KCNQ1OT1
hsa-miR-148b-5p
1.000
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000597346
Biotype: antisense
Gene id: ENSG00000269821
Gene Name: KCNQ1OT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:2685918-2685946
exon
HITS-CLIP
DIRECT
LncBasev2
LINC00630
hsa-miR-148b-5p
0.428
mTTBlnPmP
IP

Gene Details
Chromosome: X
Transcript: ENST00000440496
Biotype: lincRNA
Gene id: ENSG00000223546
Gene Name: LINC00630
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
X:102884636-102884664
exon
HITS-CLIP
DIRECT
LncBasev2
LINC01352
hsa-miR-148b-5p
0.390
mTTBlnPmP
IP

Gene Details
Chromosome: 1
Transcript: ENST00000431347
Biotype: lincRNA
Gene id: ENSG00000238078
Gene Name: LINC01352
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:emetine
Location
Region
Method
Result
Validation Type
Source
1:220831350-220831378
exon
HITS-CLIP
DIRECT
LncBasev2
MALAT1
hsa-miR-148b-5p
0.559
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65501739-65501767
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501929-65501957
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501739-65501767
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501929-65501957
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
Xue Y et al. 2013
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRN.
Location
Region
Method
Result
Validation Type
Source
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501739-65501767
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
Balakrishnan I et al. 2014
Bone Marrow
HMSC
IP
Tested Cell Line: HMSC
Category: Stem/Progenitor
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501739-65501767
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501929-65501957
exon
HITS-CLIP
DIRECT
LncBasev2
Pillai MM et al. 2014
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65505814-65505842
exon
HITS-CLIP
DIRECT
LncBasev2
11:65501739-65501767
exon
HITS-CLIP
DIRECT
LncBasev2
11:65500779-65500807
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-148b-5p
0.952
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
11:65438120-65438148
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65436450-65436478
exon
HITS-CLIP
DIRECT
LncBasev2
11:65433392-65433420
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429757-65429785
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65440865-65440893
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65427745-65427773
exon
HITS-CLIP
DIRECT
LncBasev2
11:65440865-65440893
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426657-65426685
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426657-65426685
exon
HITS-CLIP
DIRECT
LncBasev2
11:65429691-65429719
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
Haecker Irina et al. 2012
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:65433392-65433420
exon
HITS-CLIP
DIRECT
LncBasev2
NEAT1
hsa-miR-148b-5p
0.731
mTTBlnPmP
IP

Gene Details
Chromosome: 11
Transcript: NR_028272.1
Biotype: lincRNA
Gene id: NR_028272.1 (gene)
Gene Name: NEAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-148b-5p
Sequence: aaguucuguuauacacucaggc
MirBase ID: MIMAT0004699
Related Diseases:

Publication
Tissue
Cell Type
Methods
Karginov FV et al. 2013
Kidney
293S
IP
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: emetine
Location
Region
Method
Result
Validation Type
Source
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65426418-65426446
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423041-65423069
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
11:65423321-65423349
exon
HITS-CLIP
DIRECT
LncBasev2
11:65425161-65425189
exon
HITS-CLIP
DIRECT
LncBasev2
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